| ProtGenerics-package | S4 generic functions for Bioconductor proteomics infrastructure |
| accessions | S4 generic functions for Bioconductor proteomics infrastructure |
| acquisitionNum | S4 generic functions for Bioconductor proteomics infrastructure |
| addProcessing | Processing Queue |
| adjacencyMatrix | S4 generic functions for Bioconductor proteomics infrastructure |
| aggregateFeatures | S4 generic functions for Bioconductor proteomics infrastructure |
| alignRt | S4 generic functions for Bioconductor proteomics infrastructure |
| analyser | S4 generic functions for Bioconductor proteomics infrastructure |
| analyserDetails | S4 generic functions for Bioconductor proteomics infrastructure |
| analyzer | S4 generic functions for Bioconductor proteomics infrastructure |
| analyzerDetails | S4 generic functions for Bioconductor proteomics infrastructure |
| applyProcessing | Processing Queue |
| as.list-method | Generic parameter class |
| backendBpparam | General backend methods |
| backendInitialize | General backend methods |
| backendMerge | General backend methods |
| backendParallelFactor | General backend methods |
| bin | S4 generic functions for Bioconductor proteomics infrastructure |
| calculateFragments | S4 generic functions for Bioconductor proteomics infrastructure |
| centroided | S4 generic functions for Bioconductor proteomics infrastructure |
| centroided<- | S4 generic functions for Bioconductor proteomics infrastructure |
| characterOrFunction-class | Processing step |
| chromatogram | S4 generic functions for Bioconductor proteomics infrastructure |
| chromatograms | S4 generic functions for Bioconductor proteomics infrastructure |
| collisionEnergy | S4 generic functions for Bioconductor proteomics infrastructure |
| collisionEnergy<- | S4 generic functions for Bioconductor proteomics infrastructure |
| combineFeatures | S4 generic functions for Bioconductor proteomics infrastructure |
| compareChromatograms | S4 generic functions for Bioconductor proteomics infrastructure |
| compareSpectra | S4 generic functions for Bioconductor proteomics infrastructure |
| compounds | S4 generic functions for Bioconductor proteomics infrastructure |
| database | S4 generic functions for Bioconductor proteomics infrastructure |
| dataOrigin | S4 generic functions for Bioconductor proteomics infrastructure |
| dataOrigin<- | S4 generic functions for Bioconductor proteomics infrastructure |
| dataStorage | S4 generic functions for Bioconductor proteomics infrastructure |
| dataStorage<- | S4 generic functions for Bioconductor proteomics infrastructure |
| detectorType | S4 generic functions for Bioconductor proteomics infrastructure |
| estimatePrecursorIntensity | S4 generic functions for Bioconductor proteomics infrastructure |
| executeProcessingStep | Processing step |
| expemail | S4 generic functions for Bioconductor proteomics infrastructure |
| exptitle | S4 generic functions for Bioconductor proteomics infrastructure |
| extractByIndex | Extracting elements by index |
| filterAcquisitionNum | S4 generic functions for Bioconductor proteomics infrastructure |
| filterDataOrigin | S4 generic functions for Bioconductor proteomics infrastructure |
| filterDataStorage | S4 generic functions for Bioconductor proteomics infrastructure |
| filterEmptySpectra | S4 generic functions for Bioconductor proteomics infrastructure |
| filterFeatures | Filter features |
| filterIntensity | S4 generic functions for Bioconductor proteomics infrastructure |
| filterIsolationWindow | S4 generic functions for Bioconductor proteomics infrastructure |
| filterMsLevel | S4 generic functions for Bioconductor proteomics infrastructure |
| filterMz | S4 generic functions for Bioconductor proteomics infrastructure |
| filterMzRange | S4 generic functions for Bioconductor proteomics infrastructure |
| filterMzValues | S4 generic functions for Bioconductor proteomics infrastructure |
| filterNA | S4 generic functions for Bioconductor proteomics infrastructure |
| filterPolarity | S4 generic functions for Bioconductor proteomics infrastructure |
| filterPrecursorCharge | S4 generic functions for Bioconductor proteomics infrastructure |
| filterPrecursorMz | S4 generic functions for Bioconductor proteomics infrastructure |
| filterPrecursorMzRange | S4 generic functions for Bioconductor proteomics infrastructure |
| filterPrecursorMzValues | S4 generic functions for Bioconductor proteomics infrastructure |
| filterPrecursorScan | S4 generic functions for Bioconductor proteomics infrastructure |
| filterProductMz | S4 generic functions for Bioconductor proteomics infrastructure |
| filterProductMzRange | S4 generic functions for Bioconductor proteomics infrastructure |
| filterProductMzValues | S4 generic functions for Bioconductor proteomics infrastructure |
| filterRanges | S4 generic functions for Bioconductor proteomics infrastructure |
| filterRt | S4 generic functions for Bioconductor proteomics infrastructure |
| filterSpectra | Filter Spectra |
| filterValues | S4 generic functions for Bioconductor proteomics infrastructure |
| impute | S4 generic functions for Bioconductor proteomics infrastructure |
| instrumentCustomisations | S4 generic functions for Bioconductor proteomics infrastructure |
| instrumentManufacturer | S4 generic functions for Bioconductor proteomics infrastructure |
| instrumentModel | S4 generic functions for Bioconductor proteomics infrastructure |
| intensity | S4 generic functions for Bioconductor proteomics infrastructure |
| intensity<- | S4 generic functions for Bioconductor proteomics infrastructure |
| ionCount | S4 generic functions for Bioconductor proteomics infrastructure |
| ions | S4 generic functions for Bioconductor proteomics infrastructure |
| ionSource | S4 generic functions for Bioconductor proteomics infrastructure |
| ionSourceDetails | S4 generic functions for Bioconductor proteomics infrastructure |
| isCentroided | S4 generic functions for Bioconductor proteomics infrastructure |
| isolationWindowLowerMz | S4 generic functions for Bioconductor proteomics infrastructure |
| isolationWindowLowerMz<- | S4 generic functions for Bioconductor proteomics infrastructure |
| isolationWindowTargetMz | S4 generic functions for Bioconductor proteomics infrastructure |
| isolationWindowTargetMz<- | S4 generic functions for Bioconductor proteomics infrastructure |
| isolationWindowUpperMz | S4 generic functions for Bioconductor proteomics infrastructure |
| isolationWindowUpperMz<- | S4 generic functions for Bioconductor proteomics infrastructure |
| isReadOnly | General backend methods |
| mass | S4 generic functions for Bioconductor proteomics infrastructure |
| modifications | S4 generic functions for Bioconductor proteomics infrastructure |
| msInfo | S4 generic functions for Bioconductor proteomics infrastructure |
| msLevel | S4 generic functions for Bioconductor proteomics infrastructure |
| msLevel<- | S4 generic functions for Bioconductor proteomics infrastructure |
| mz | S4 generic functions for Bioconductor proteomics infrastructure |
| mz<- | S4 generic functions for Bioconductor proteomics infrastructure |
| Param | Generic parameter class |
| Param-class | Generic parameter class |
| peaks | S4 generic functions for Bioconductor proteomics infrastructure |
| peaks<- | S4 generic functions for Bioconductor proteomics infrastructure |
| peaksData | Get or set MS peak data |
| peaksData<- | Get or set MS peak data |
| peaksVariables | Get or set MS peak data |
| peptides | S4 generic functions for Bioconductor proteomics infrastructure |
| polarity | S4 generic functions for Bioconductor proteomics infrastructure |
| polarity<- | S4 generic functions for Bioconductor proteomics infrastructure |
| precAcquisitionNum | S4 generic functions for Bioconductor proteomics infrastructure |
| precScanNum | S4 generic functions for Bioconductor proteomics infrastructure |
| precursorCharge | S4 generic functions for Bioconductor proteomics infrastructure |
| precursorCharge<- | S4 generic functions for Bioconductor proteomics infrastructure |
| precursorIntensity | S4 generic functions for Bioconductor proteomics infrastructure |
| precursorIntensity<- | S4 generic functions for Bioconductor proteomics infrastructure |
| precursorMz | S4 generic functions for Bioconductor proteomics infrastructure |
| precursorMz<- | S4 generic functions for Bioconductor proteomics infrastructure |
| processingChunkFactor | Processing Queue |
| processingChunkSize | Processing Queue |
| processingChunkSize<- | Processing Queue |
| processingData | S4 generic functions for Bioconductor proteomics infrastructure |
| processingData<- | S4 generic functions for Bioconductor proteomics infrastructure |
| processingQueue | Processing Queue |
| ProcessingStep | Processing step |
| ProcessingStep-class | Processing step |
| productMz | S4 generic functions for Bioconductor proteomics infrastructure |
| productMz<- | S4 generic functions for Bioconductor proteomics infrastructure |
| proteins | S4 generic functions for Bioconductor proteomics infrastructure |
| ProtGenerics | S4 generic functions for Bioconductor proteomics infrastructure |
| psms | S4 generic functions for Bioconductor proteomics infrastructure |
| quantify | S4 generic functions for Bioconductor proteomics infrastructure |
| rtime | S4 generic functions for Bioconductor proteomics infrastructure |
| rtime<- | S4 generic functions for Bioconductor proteomics infrastructure |
| scanIndex | S4 generic functions for Bioconductor proteomics infrastructure |
| scans | S4 generic functions for Bioconductor proteomics infrastructure |
| setBackend | General backend methods |
| show-method | Generic parameter class |
| show-method | Processing step |
| smooth | S4 generic functions for Bioconductor proteomics infrastructure |
| smoothed | S4 generic functions for Bioconductor proteomics infrastructure |
| smoothed<- | S4 generic functions for Bioconductor proteomics infrastructure |
| spectra | S4 generic functions for Bioconductor proteomics infrastructure |
| spectra<- | S4 generic functions for Bioconductor proteomics infrastructure |
| spectraData | S4 generic functions for Bioconductor proteomics infrastructure |
| spectraData<- | S4 generic functions for Bioconductor proteomics infrastructure |
| spectraNames | S4 generic functions for Bioconductor proteomics infrastructure |
| spectraNames<- | S4 generic functions for Bioconductor proteomics infrastructure |
| spectrapply | S4 generic functions for Bioconductor proteomics infrastructure |
| spectraVariables | S4 generic functions for Bioconductor proteomics infrastructure |
| supportsSetBackend | General backend methods |
| tic | S4 generic functions for Bioconductor proteomics infrastructure |
| tolerance | S4 generic functions for Bioconductor proteomics infrastructure |
| uniqueMsLevels | S4 generic functions for Bioconductor proteomics infrastructure |
| writeMSData | S4 generic functions for Bioconductor proteomics infrastructure |